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Population genetics

By vojta , 13 January 2020

Low genetic differentiation despite high fragmentation in the endemic serpentinophyte Minuartia smejkalii (M. verna agg., Caryophyllaceae) revealed by RADSeq SNP markers

Minuartia smejkalii is an obligate serpentinophyte plant endemic to the Czech Republic. Since the 1960s, the species’ habitat has undergone strong human-mediated fragmentation, resulting in extinction of some populations and dramatic size reduction of the remaining populations. Thus, contrary to the typically stable serpentine habitats, M. smejkalii habitats underwent a recent and severe decline, which can exacerbate the effects of fragmentation on population genetic structure. We examined the genetic structure of all known M.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeography
Population genetics
Taxonomy
Science, research, biology
By vojta , 7 October 2019

Course of work with molecular data in R 2020

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

The course contains theory of used methods, tutorials with test data, tasks for individual work of participants, and more.

Previous knowledge of R is useful, but not necessary. At least basic knowledge of molecular biology is required, previous knowledge about any methods how to analyse DNA data is recommended.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Teaching
By vojta , 29 May 2019

Analysis of wild Taraxacum bicorne Dahlst. (Compositae–Crepidinae) as a potential alternative natural rubber crop

Taraxacum koksaghyz Rodin, a dandelion from the steppes of south-eastern Kazakhstan, has been known for long time as potential rubber producer, as a temperate region alternative to the tropical rubber tree Hevea brasiliensis Müll. Arg.. In this work, we evaluate Taraxacum bicorne Dahlst. (wild populations), a closely related congener of T. koksaghyz.

Články
Institute of Botany, Czech Academy of Sciences
Population genetics
Taraxacum
Taxonomy
Science, research, biology
By vojta , 21 November 2018

Taxonomic principles, reproductive systems, population genetics and relationships within selected groups of genus Taraxacum (Asteraceae)

Genus Taraxacum (Asteraceae), having ∼60 sections and 2,800 species, is known for its complicated evolutionary relationships and taxonomy due to processes like frequent hybridization, polyploidization, asexual reproduction, clonality and low structural morphological variability. Various taxonomical concepts and approaches are reviewed, evaluated and discussed from point of view of their ability to deal with such a complicated genera as is Taraxacum. Various processes responsible for the complicated situation within Taraxacum are discussed and reviewed. Section Dioszegia, comprising T.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Phylogeography
Population genetics
Faculty of Science, Charles University
Taraxacum
Taxonomy
Science, research, biology
By vojta , 6 October 2018

Course of work with molecular data in R 2019

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 4 October 2017

Course of work with molecular data in R 2018

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

The course will be extended this year, prolonged to 4 days and honored by 2 credits.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 11 October 2016

Course of work with molecular data in R 2017

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 20 February 2016

Identification of oligoclonal agamospermous microspecies: taxonomic specialists versus microsatellites

There has been a decrease in the ability of biologists to identify their material correctly, particu- larly plants of complicated genera with common agamospermy, where old clonal entities are accorded the rank of species (microspecies). Agamospermous microspecies are taxonomic enti- ties recognizable from one another by a set of minute morphological features. The knowledge of microspecies is confined to a few specialists. Specialists usemicrospecies names but there could be inconsistencies in the taxonomic concepts used by different, geographically remote experts.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Population genetics
R
Taraxacum
Taxonomy
Science, research, biology
By vojta , 26 November 2015

Course of work with molecular data in R 2016

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 13 April 2015

Microsatellite variation, sexual reproduction and taxonomic revision of Taraxacum sect. Dioszegia: relationships at a large spatial scale

Taraxacum serotinumThe coexistence of agamospermy and sexuality characterizes most of the ~60 sections of the genus Taraxacum. Section Dioszegia, comprising T. serotinum and its allies, are an exception because only sexuals are reported for all the members of this group.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Phylogeography
Population genetics
Taraxacum
Taxonomy
Science, research, biology

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