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Phylogeny

By vojta , 2 August 2018

Hunting the treasure of Cape Oxalis diversity

Poster presented at Botany 2018 conference of the Botanical Society of America titled Hunting the treasure of Cape Oxalis diversity (Zeisek, Oberlander, Dreyer, Schmickl, Schneeweiss):

Články
Bioinformatics
Institute of Botany, Czech Academy of Sciences
Phylogeny
HybSeq
Oxalis
Faculty of Science, Charles University
Taxonomy
Science, research, biology
By vojta , 4 October 2017

Course of work with molecular data in R 2018

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

The course will be extended this year, prolonged to 4 days and honored by 2 credits.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 11 October 2016

Course of work with molecular data in R 2017

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 20 February 2016

Identification of oligoclonal agamospermous microspecies: taxonomic specialists versus microsatellites

There has been a decrease in the ability of biologists to identify their material correctly, particu- larly plants of complicated genera with common agamospermy, where old clonal entities are accorded the rank of species (microspecies). Agamospermous microspecies are taxonomic enti- ties recognizable from one another by a set of minute morphological features. The knowledge of microspecies is confined to a few specialists. Specialists usemicrospecies names but there could be inconsistencies in the taxonomic concepts used by different, geographically remote experts.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Population genetics
R
Taraxacum
Taxonomy
Science, research, biology
By vojta , 26 November 2015

Course of work with molecular data in R 2016

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 26 November 2015

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low-copy nuclear (LCN) loci for phylogenetics in non-model organisms, we created an automated and interactive script to select hundreds of LCN loci by a comparison between transcriptome and genome skim data. We used our script to obtain LCN genes for southern African Oxalis (Oxalidaceae), a speciose plant lineage in the Greater Cape Floristic Region.

Články
Bioinformatics
Phylogeny
HybSeq
Linux (and another software)
Oxalis
Faculty of Science, Charles University
Taxonomy
Science, research, biology
By vojta , 13 April 2015

Microsatellite variation, sexual reproduction and taxonomic revision of Taraxacum sect. Dioszegia: relationships at a large spatial scale

Taraxacum serotinumThe coexistence of agamospermy and sexuality characterizes most of the ~60 sections of the genus Taraxacum. Section Dioszegia, comprising T. serotinum and its allies, are an exception because only sexuals are reported for all the members of this group.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Phylogeography
Population genetics
Taraxacum
Taxonomy
Science, research, biology
By vojta , 8 December 2014

Course of work with molecular data in R 2015

Since academic year 2015/16 is the course scheduled in SIS as MB120C16.

Články
Phylogeny
Phylogeography
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching

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This work by Vojtěch Zeisek is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

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