R

Course of work with molecular data in R 2020 in České Budějovice

Submitted by vojta on Fri, 03/06/2020 - 22:39

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course. The course will be taught from October 19th to Friday 23rd (see below). Details will be updated by the end of September.

The course contains theory of used methods, tutorials with test data, tasks for individual work of participants, and more.

Course of work with molecular data in R 2020

Submitted by vojta on Mon, 10/07/2019 - 16:28

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

The course contains theory of used methods, tutorials with test data, tasks for individual work of participants, and more.

Previous knowledge of R is useful, but not necessary. At least basic knowledge of molecular biology is required, previous knowledge about any methods how to analyse DNA data is recommended.

Course of work with molecular data in R 2019

Submitted by vojta on Sat, 10/06/2018 - 17:18

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Course of work with molecular data in R 2018

Submitted by vojta on Wed, 10/04/2017 - 11:00

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

The course will be extended this year, prolonged to 4 days and honored by 2 credits.

Course of work with molecular data in R 2017

Submitted by vojta on Tue, 10/11/2016 - 14:38

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Identification of oligoclonal agamospermous microspecies: taxonomic specialists versus microsatellites

Submitted by vojta on Sat, 02/20/2016 - 14:50

There has been a decrease in the ability of biologists to identify their material correctly, particu- larly plants of complicated genera with common agamospermy, where old clonal entities are accorded the rank of species (microspecies). Agamospermous microspecies are taxonomic enti- ties recognizable from one another by a set of minute morphological features. The knowledge of microspecies is confined to a few specialists. Specialists usemicrospecies names but there could be inconsistencies in the taxonomic concepts used by different, geographically remote experts.

Course of work with molecular data in R 2016

Submitted by vojta on Thu, 11/26/2015 - 18:35

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Arlequin and R under Linux

Submitted by vojta on Tue, 07/01/2014 - 12:42

Arlequin is very popular tool for population genetics and in recent version (3.5) it has version running on Linux (arlecore, only computational core without GUI) as well as possibility to parse output using R statistical language. Those two features are described only briefly in official manual. I faced some issues when running Arlequin on Linux and parsing output using R. I'm describing here my solutions in case someone else would hava similar needs and problems.