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Bioinformatics

By vojta, 19 December, 2019

HybSeq course 2020

Intensive 4-days (5th day is not compulsory, but is open for any discussion, if there would be interest) course to learn all theory about HybSeq and practically learn how to analyze HybSeq data, how to solve all problems, and how to evaluate differences among gene trees. Important part is enough time to discuss everything, including practical problems and projects of individual participants.

Články
Bioinformatics
HybSeq
Linux (and another software)
Faculty of Science, Charles University
Science, research, biology
Teaching
By vojta, 2 August, 2018

Hunting the treasure of Cape Oxalis diversity

Poster presented at Botany 2018 conference of the Botanical Society of America titled Hunting the treasure of Cape Oxalis diversity (Zeisek, Oberlander, Dreyer, Schmickl, Schneeweiss):

Články
Bioinformatics
Institute of Botany, Czech Academy of Sciences
Phylogeny
HybSeq
Oxalis
Faculty of Science, Charles University
Taxonomy
Science, research, biology
By vojta, 26 November, 2015

Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae)

Phylogenetics benefits from using a large number of putatively independent nuclear loci and their combination with other sources of information, such as the plastid and mitochondrial genomes. To facilitate the selection of orthologous low-copy nuclear (LCN) loci for phylogenetics in non-model organisms, we created an automated and interactive script to select hundreds of LCN loci by a comparison between transcriptome and genome skim data. We used our script to obtain LCN genes for southern African Oxalis (Oxalidaceae), a speciose plant lineage in the Greater Cape Floristic Region.

Články
Bioinformatics
Phylogeny
HybSeq
Linux (and another software)
Oxalis
Faculty of Science, Charles University
Taxonomy
Science, research, biology

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This work by Vojtěch Zeisek is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

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