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By vojta , 19 December 2019

HybSeq course 2020

Intensive 4-days (5th day is not compulsory, but is open for any discussion, if there would be interest) course to learn all theory about HybSeq and practically learn how to analyze HybSeq data, how to solve all problems, and how to evaluate differences among gene trees. Important part is enough time to discuss everything, including practical problems and projects of individual participants.

Články
Bioinformatics
HybSeq
Linux (and another software)
Faculty of Science, Charles University
Science, research, biology
Teaching
By vojta , 7 October 2019

Course of work in Linux command line not only for MetaCentrum 2020

Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.

Course will be taught in Linux, but most of the point are applicable also for another UNIX systems like osX.

Články
Linux (and another software)
openSUSE
Faculty of Science, Charles University
Teaching
By vojta , 7 October 2019

Course of work with molecular data in R 2020

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

The course contains theory of used methods, tutorials with test data, tasks for individual work of participants, and more.

Previous knowledge of R is useful, but not necessary. At least basic knowledge of molecular biology is required, previous knowledge about any methods how to analyse DNA data is recommended.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Teaching
By vojta , 29 May 2019

Analysis of wild Taraxacum bicorne Dahlst. (Compositae–Crepidinae) as a potential alternative natural rubber crop

Taraxacum koksaghyz Rodin, a dandelion from the steppes of south-eastern Kazakhstan, has been known for long time as potential rubber producer, as a temperate region alternative to the tropical rubber tree Hevea brasiliensis Müll. Arg.. In this work, we evaluate Taraxacum bicorne Dahlst. (wild populations), a closely related congener of T. koksaghyz.

Články
Institute of Botany, Czech Academy of Sciences
Population genetics
Taraxacum
Taxonomy
Science, research, biology
By vojta , 2 January 2019

PF 2019

Pour féliciter 2019!

Články
Others
By vojta , 21 November 2018

Taxonomic principles, reproductive systems, population genetics and relationships within selected groups of genus Taraxacum (Asteraceae)

Genus Taraxacum (Asteraceae), having ∼60 sections and 2,800 species, is known for its complicated evolutionary relationships and taxonomy due to processes like frequent hybridization, polyploidization, asexual reproduction, clonality and low structural morphological variability. Various taxonomical concepts and approaches are reviewed, evaluated and discussed from point of view of their ability to deal with such a complicated genera as is Taraxacum. Various processes responsible for the complicated situation within Taraxacum are discussed and reviewed. Section Dioszegia, comprising T.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Phylogeography
Population genetics
Faculty of Science, Charles University
Taraxacum
Taxonomy
Science, research, biology
By vojta , 6 October 2018

Course of work with molecular data in R 2019

R is nowadays probably the most powerful tool for statistics of all types. There are plenty of modules available for work with molecular data. Those will be introduced during the course. Previous knowledge of R is useful, but not necessary. If there is at least one participant not speaking Czech, the course will be in English.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Science, research, biology
Teaching
By vojta , 6 October 2018

Course of work in Linux command line not only for MetaCentrum 2019

Don’t be afraid of command line! It is friendly and powerful tool. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. Basic knowledge of Linux is not conditional. Course will be taught in Linux, but most of the point are applicable also for another UNIX systems like osX. Knowledge of Linux/UNIX is useful e.g. for working with molecular and another data. MetaCentrum is service provided by CESNET allowing access to huge computational capacity.

Články
Linux (and another software)
openSUSE
Faculty of Science, Charles University
Science, research, biology
Teaching
By vojta , 2 August 2018

Hunting the treasure of Cape Oxalis diversity

Poster presented at Botany 2018 conference of the Botanical Society of America titled Hunting the treasure of Cape Oxalis diversity (Zeisek, Oberlander, Dreyer, Schmickl, Schneeweiss):

Články
Bioinformatics
Institute of Botany, Czech Academy of Sciences
Phylogeny
HybSeq
Oxalis
Faculty of Science, Charles University
Taxonomy
Science, research, biology
By vojta , 27 February 2018

Crisis 1938

This year we can remind plenty of "eighth" anniversaries, including year 1938. Czechoslovakia was target of operation we use to call a hybrid war nowadays. Aggressor was not Putin's Russia, which is nowadays more (Ukraine, Georgia, Moldova, ...) or less (EU, North America) systematically destabilizing states, where it has power ambitions. That time aggressor was Hitler's Germany, which (similarly to contemporary Russia) misused its minorities in countries of central and eastern Europe to their destabilization and conquest.

Články
Others

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