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By vojta, 6 October, 2020

Course of work in Linux command line not only for MetaCentrum 2021

Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple macOS, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.

Course will be taught in Linux, but most of the point are applicable also for another UNIX systems like macOS.

Články
Linux (and another software)
openSUSE
Faculty of Science, Charles University
Teaching
By vojta, 6 March, 2020

Course of work with molecular data in R 2020 in České Budějovice

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course. The course will be taught from October 19th to Friday 23rd (see below). The course will be exclusively on-line, there will be no personal meeting.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Teaching
By vojta, 13 January, 2020

Low genetic differentiation despite high fragmentation in the endemic serpentinophyte Minuartia smejkalii (M. verna agg., Caryophyllaceae) revealed by RADSeq SNP markers

Minuartia smejkalii is an obligate serpentinophyte plant endemic to the Czech Republic. Since the 1960s, the species’ habitat has undergone strong human-mediated fragmentation, resulting in extinction of some populations and dramatic size reduction of the remaining populations. Thus, contrary to the typically stable serpentine habitats, M. smejkalii habitats underwent a recent and severe decline, which can exacerbate the effects of fragmentation on population genetic structure. We examined the genetic structure of all known M.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeography
Population genetics
Taxonomy
Science, research, biology
By vojta, 22 December, 2019

PF 2020

Pour féliciter 2020!

PF 2020

Články
Others
By vojta, 19 December, 2019

HybSeq course 2020

Intensive 4-days (5th day is not compulsory, but is open for any discussion, if there would be interest) course to learn all theory about HybSeq and practically learn how to analyze HybSeq data, how to solve all problems, and how to evaluate differences among gene trees. Important part is enough time to discuss everything, including practical problems and projects of individual participants.

Články
Bioinformatics
HybSeq
Linux (and another software)
Faculty of Science, Charles University
Science, research, biology
Teaching
By vojta, 7 October, 2019

Course of work in Linux command line not only for MetaCentrum 2020

Don’t be afraid of command line! It is friendly and powerful tool allowing to process large data and automate tasks. Practically identical is command line also in Apple osX, BSD and another UNIX-based systems, not only in Linux. The course is designed for total beginners as well as intermediate advanced students. The only requirement is an interest (or need) to work in command line, typically on Linux computing server.

Course will be taught in Linux, but most of the point are applicable also for another UNIX systems like osX.

Články
Linux (and another software)
openSUSE
Faculty of Science, Charles University
Teaching
By vojta, 7 October, 2019

Course of work with molecular data in R 2020

R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.

The course contains theory of used methods, tutorials with test data, tasks for individual work of participants, and more.

Previous knowledge of R is useful, but not necessary. At least basic knowledge of molecular biology is required, previous knowledge about any methods how to analyse DNA data is recommended.

Články
Phylogeny
Phylogeography
Linux (and another software)
Population genetics
Faculty of Science, Charles University
R
Taxonomy
Teaching
By vojta, 29 May, 2019

Analysis of wild Taraxacum bicorne Dahlst. (Compositae–Crepidinae) as a potential alternative natural rubber crop

Taraxacum koksaghyz Rodin, a dandelion from the steppes of south-eastern Kazakhstan, has been known for long time as potential rubber producer, as a temperate region alternative to the tropical rubber tree Hevea brasiliensis Müll. Arg.. In this work, we evaluate Taraxacum bicorne Dahlst. (wild populations), a closely related congener of T. koksaghyz.

Články
Institute of Botany, Czech Academy of Sciences
Population genetics
Taraxacum
Taxonomy
Science, research, biology
By vojta, 2 January, 2019

PF 2019

Pour féliciter 2019!

Články
Others
By vojta, 21 November, 2018

Taxonomic principles, reproductive systems, population genetics and relationships within selected groups of genus Taraxacum (Asteraceae)

Genus Taraxacum (Asteraceae), having ∼60 sections and 2,800 species, is known for its complicated evolutionary relationships and taxonomy due to processes like frequent hybridization, polyploidization, asexual reproduction, clonality and low structural morphological variability. Various taxonomical concepts and approaches are reviewed, evaluated and discussed from point of view of their ability to deal with such a complicated genera as is Taraxacum. Various processes responsible for the complicated situation within Taraxacum are discussed and reviewed. Section Dioszegia, comprising T.

Články
Institute of Botany, Czech Academy of Sciences
Phylogeny
Phylogeography
Population genetics
Faculty of Science, Charles University
Taraxacum
Taxonomy
Science, research, biology

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