Arlequin and R under Linux

Submitted by vojta on Tue, 07/01/2014 - 12:42

Arlequin is very popular tool for population genetics and in recent version (3.5) it has version running on Linux (arlecore, only computational core without GUI) as well as possibility to parse output using R statistical language. Those two features are described only briefly in official manual. I faced some issues when running Arlequin on Linux and parsing output using R. I'm describing here my solutions in case someone else would hava similar needs and problems.

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Přednáška o skautské metodice pro KDF MFF

Submitted by vojta on Wed, 04/23/2014 - 11:54

Již nějakou dobu každý rok přednáším jednu hodinu na semináři Katedře didaktiky fyziky MFF UK o skautské metodice. V minulých letech jsem mluvil hlavně o tvorbě nového výchovného programu. Jaký byl výchozí stav, proč jej bylo nutné změnit, jak celý proces vypadal a jaký je výsledek. Teď jsem se zaměřil více na metodiku jako takovou (aniž by předchozí téma zmizelo) a přidal jsem i špetku historie a myšlenkových základů.

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Master thesis Phylogeography and dispersal of Nuphar lutea

Submitted by vojta on Thu, 10/08/2009 - 15:49

Phylogeographical studies of aquatic plants are relatively rare, although river corridors are amazing study system. There are many questions about dispersal within river catchment and between different river basins.

English

Conferention Plant Population Biology 2008

Submitted by vojta on Wed, 05/07/2008 - 17:30

May 1 to 3 2008 I was on conferention Plant Population Biology for the coming decade (21th Annual Conference of the Plant Population Biology Section of the Ecological Society of Germany, Switzerland and Austria (GfÖ), Organized by the Department of Population Biology, Musée national d'histoire naturelle). I presented my poster about preliminary result of phylogeography of Nuphar lutea (yellow water lily) in Czechia.

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Bachelor thesis

Submitted by vojta on Wed, 05/30/2007 - 18:42

In my bachelor thesis I present temporal pieces of knowledge on phytogeography, and especially molecular phylogeography of water clonal plants and possibilities of their dispersion. Plenty of questions about history, dispersal, relationship and population structure we can not answer without molecular technologies at all. Another very important components influencing dispersal of plants and animals are their ecology and physiology.

English